PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100111.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 318aa    MW: 35800.2 Da    PI: 7.7276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.18.9e-16238263126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tGtC+yG++C+FaHg
  XP_011100111.1 238 FKTELCNKWQETGTCPYGENCQFAHG 263
                     79***********************8 PP

2zf-CCCH21.25e-07276301126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykte Cr  +++ +C+yG rC+F H+
  XP_011100111.1 276 YKTEVCRMVLAGDICPYGHRCHFRHS 301
                     9**********55**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-19233270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-11234269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.455237265IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-9237264IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-12238263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9271306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-12271304IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188275303IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MQNENVSFDA LTTTTTSAAA SAPLYFSRSN PFLSPTSPSY LNSSASFYSS LFQNYSPNSI  60
SDTASFDGGD TERRLHDASC ILEYQQLYNR YTLCLSQLHD SIEEVDALRR ENDSLRVSNA  120
DLSHRVALLF SRDRLLSEFN RLNIASPSSA VPLPVHVASP QPLIEHNRVE RINTERVSLP  180
KSISVRSRGY LKMTRPGRDT SRHKTVSEPC PASQRVCIPG AKKEEEALEF DVYNQGMFKT  240
ELCNKWQETG TCPYGENCQF AHGIKELRPV IRHPRYKTEV CRMVLAGDIC PYGHRCHFRH  300
SLTEQERLLA VPSPAPPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A9e-23238304470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0761021e-39KJ076102.1 Sesamum indicum clone TilSSR_47303 microsatellite Sesame_47303 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100111.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N36e-79C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A022RXA41e-154A0A022RXA4_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000785831e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-79C3H family protein